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    • Trait evolution across scales
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  • Publications
    • Widespread Selection Relaxation in Aquatic Mammals
    • An Introduction to the Special Issue: Inferring Macroevolutionary Patterns and Processes from Microevolutionary Mechanisms
    • Detecting Diversifying Selection for a Trait from within and Between-Species Genotypes and Phenotypes
    • Toward a Semi-Supervised Learning Approach to Phylogenetic Estimation
    • Estimating the Proportion of Beneficial Mutations That Are Not Adaptive in Mammals
    • Gene Expression Is the Main Driver of Purifying Selection in Large Penguin Populations
    • Genes and Sites under Adaptation at the Phylogenetic Scale Also Exhibit Adaptation at the Population-Genetic Scale
    • An Improved Codon Modeling Approach for Accurate Estimation of the Mutation Bias
    • Bridging Time Scales in Evolutionary Biology
    • Quantifying the Impact of Changes in Effective Population Size and Expression Level on the Rate of Coding Sequence Evolution
    • Inferring Long-Term Effective Population Size with Mutation--Selection Models
    • A Bayesian Mutation-Selection Framework for Detecting Site-Specific Adaptive Evolution in Protein-Coding Genes
    • Modelling the Articulation of Selective and Neutral Mechanisms in the Evolution of Protein-Coding DNA Sequences
    • The Red Queen Model of Recombination Hot-Spot Evolution: A Theoretical Investigation.
  • Teaching
    • Impact de la sélection sur la génétique des populations (1/2)
    • Origine et maintient de la variation génétique (2/2)
    • Introduction to Snakemake for reproducible research
    • Démarche scientifique
    • Reproducible science (Next-Generation Sequencing)
    • Variant Calling (CNRS Formation Permanente)

Variant Calling (CNRS Formation Permanente)

Sep 1, 2019·
M. Gautier
,
A. Haudry
,
T. Latrille
· 1 min read
PDF Code Slides

This practical work was given as part of the CNRS Formation Permanente in September 2018. The documentations and slides are available here and here respectively. The code is available on the GitHub repository.

Last updated on Sep 1, 2019
← Reproducible science (Next-Generation Sequencing)